edu.ucla.stat.SOCR.analyses.command.volume
Class Test_FDR

java.lang.Object
  edu.ucla.stat.SOCR.analyses.command.volume.Test_FDR

public class Test_FDR
extends java.lang.Object

Constructor Summary

Test_FDR()
FDR object constructor

Method Summary

static void	fuseFDRResultsWithMask() fuseFDRResultsWithMask() method This method fuses back the FDR-corrected pValues with the mask ( to produce an output of the same dimension as the initial array of p-values p_values * mask -> MaskedPvalues --FDR--> thresholdedPMap -> FuseWithMask -> Results
static void	main(java.lang.String[] args) FDR object main method
static void	maskPValues() maskPValues() method This method extracts only the pValues that are under the mask (shrinks the pvalues array) Extract the data under the mask! p_values * mask -> MaskedPvalues --FDR--> thresholdedPMap -> FuseWithMask -> Results
static void	readAsciiData() readAsciiData() method Reads data from an ASCII text file (one number, probability-value, per line)
static void	readAsciiMaskShape() readAsciiMaskShape() method Reads shape mask from an ASCII text file (one number, probability-value, per line)
static void	readBinaryData() readBinaryData() method Reads data from a Binary file (4-byte floats)
static void	readBinaryMaskVolume() readBinaryMaskVolume() method Reads volume-mask from a Binary file (1-byte character array)
static void	reportUsage() reportUsage() method Report the usage of this class
static void	setByteOrder(javax.imageio.stream.MemoryCacheImageInputStream dis, java.lang.String byteorder) This method sets the Bite-Order for a MemoryCacheImageInputStream
static void	setByteOrder(javax.imageio.stream.MemoryCacheImageOutputStream dos, java.lang.String byteorder) This method sets the Bite-Order for a MemoryCacheImageOutputStream
static void	writeAsciiData() writeAsciiData() method Writes results to an ASCII text file (one number, probability-value, per line)
static void	writeBinaryData() writeBinaryData() method Writes results to a Binary file (4-byte float)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Test_FDR

public Test_FDR()

FDR object constructor

Method Detail

reportUsage

public static void reportUsage()

reportUsage() method Report the usage of this class

main

public static void main(java.lang.String[] args)

FDR object main method

Parameters:

args - a String array of command-line call arguments

readAsciiData

public static void readAsciiData()

readAsciiData() method Reads data from an ASCII text file (one number, probability-value, per line)

readAsciiMaskShape

public static void readAsciiMaskShape()

readAsciiMaskShape() method Reads shape mask from an ASCII text file (one number, probability-value, per line)

writeAsciiData

public static void writeAsciiData()

writeAsciiData() method Writes results to an ASCII text file (one number, probability-value, per line)

readBinaryData

public static void readBinaryData()

readBinaryData() method Reads data from a Binary file (4-byte floats)

readBinaryMaskVolume

public static void readBinaryMaskVolume()

readBinaryMaskVolume() method Reads volume-mask from a Binary file (1-byte character array)

writeBinaryData

public static void writeBinaryData()

writeBinaryData() method Writes results to a Binary file (4-byte float)

maskPValues

public static void maskPValues()

maskPValues() method This method extracts only the pValues that are under the mask (shrinks the pvalues array) Extract the data under the mask! p_values * mask -> MaskedPvalues --FDR--> thresholdedPMap -> FuseWithMask -> Results

fuseFDRResultsWithMask

public static void fuseFDRResultsWithMask()

fuseFDRResultsWithMask() method This method fuses back the FDR-corrected pValues with the mask ( to produce an output of the same dimension as the initial array of p-values p_values * mask -> MaskedPvalues --FDR--> thresholdedPMap -> FuseWithMask -> Results

setByteOrder

public static void setByteOrder(javax.imageio.stream.MemoryCacheImageInputStream dis,
                                java.lang.String byteorder)

This method sets the Bite-Order for a MemoryCacheImageInputStream

Parameters:

dis - - MemoryCacheImageInputStream

byteorder - - String representation of byteorder. Options are big (java.nio.ByteOrder.BIG_ENDIAN) little (java.nio.ByteOrder.LITTLE_ENDIAN) system (default system byteorder, java.nio.ByteOrder.nativeOrder())

setByteOrder

public static void setByteOrder(javax.imageio.stream.MemoryCacheImageOutputStream dos,
                                java.lang.String byteorder)

This method sets the Bite-Order for a MemoryCacheImageOutputStream

Parameters:

dis - - MemoryCacheImageOutputStream

byteorder - - String representation of byteorder. Options are big (java.nio.ByteOrder.BIG_ENDIAN) little (java.nio.ByteOrder.LITTLE_ENDIAN) system (default system byteorder, java.nio.ByteOrder.nativeOrder())