edu.ucla.stat.SOCR.analyses.model
Class FisherExact

java.lang.Object
  edu.ucla.stat.SOCR.analyses.model.FisherExact

All Implemented Interfaces:

Analysis

public class FisherExact
extends java.lang.Object
implements Analysis

Field Summary

static java.lang.String	COL_NAMES
static java.lang.String	OBSERVED_DATA
static java.lang.String	ROW_NAMES
static java.lang.String	SIGNIFICANCE_LEVEL

Constructor Summary

FisherExact()

Method Summary

Result	analyze(Data data, short analysisType)
double	ErrorMatrix(ContingencyTable A1, ContingencyTable A2)
double	get1TailPCutoff(ContingencyTable contTable, double p_naught)
double	get1TailPCutoffHigherOrder(ContingencyTable contTable, double p_naught)
double	get2TailPCutoff(ContingencyTable contTable, double p_naught)
double	get2TailPCutoffHigherOrder(ContingencyTable contTable, double p_naught)
java.lang.String	getAnalysisType()
ContingencyTable	getNewMaskMetropolisMatrix(ContingencyTable contTable, double p_naught)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

OBSERVED_DATA

public static final java.lang.String OBSERVED_DATA

See Also:

Constant Field Values

SIGNIFICANCE_LEVEL

public static final java.lang.String SIGNIFICANCE_LEVEL

See Also:

Constant Field Values

ROW_NAMES

public static final java.lang.String ROW_NAMES

See Also:

Constant Field Values

COL_NAMES

public static final java.lang.String COL_NAMES

See Also:

Constant Field Values

Constructor Detail

FisherExact

public FisherExact()

Method Detail

getAnalysisType

public java.lang.String getAnalysisType()

Specified by:

getAnalysisType in interface Analysis

analyze

public Result analyze(Data data,
                      short analysisType)
               throws WrongAnalysisException,
                      DataIsEmptyException,
                      NumberTooBigException

Specified by:

analyze in interface Analysis

Throws:

WrongAnalysisException

DataIsEmptyException

NumberTooBigException

get1TailPCutoff

public double get1TailPCutoff(ContingencyTable contTable,
                              double p_naught)
                       throws NumberTooBigException

Throws:

NumberTooBigException

get2TailPCutoff

public double get2TailPCutoff(ContingencyTable contTable,
                              double p_naught)
                       throws NumberTooBigException

Throws:

NumberTooBigException

get1TailPCutoffHigherOrder

public double get1TailPCutoffHigherOrder(ContingencyTable contTable,
                                         double p_naught)
                                  throws NumberTooBigException

Throws:

NumberTooBigException

get2TailPCutoffHigherOrder

public double get2TailPCutoffHigherOrder(ContingencyTable contTable,
                                         double p_naught)
                                  throws NumberTooBigException

Throws:

NumberTooBigException

ErrorMatrix

public double ErrorMatrix(ContingencyTable A1,
                          ContingencyTable A2)

getNewMaskMetropolisMatrix

public ContingencyTable getNewMaskMetropolisMatrix(ContingencyTable contTable,
                                                   double p_naught)
                                            throws NumberTooBigException

Throws:

NumberTooBigException