edu.ucla.stat.SOCR.analyses.gui
Class Clustering

java.lang.Object
  java.awt.Component
      java.awt.Container
          java.awt.Panel
              java.applet.Applet
                  javax.swing.JApplet
                      edu.ucla.stat.SOCR.analyses.gui.Analysis
                          edu.ucla.stat.SOCR.analyses.gui.Clustering

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.beans.PropertyChangeListener, java.io.Serializable, java.lang.Runnable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer

public class Clustering
extends Analysis
implements java.beans.PropertyChangeListener

this class is for Logistic Regression only.

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JApplet

javax.swing.JApplet.AccessibleJApplet

Nested classes/interfaces inherited from class java.applet.Applet

java.applet.Applet.AccessibleApplet

Nested classes/interfaces inherited from class java.awt.Panel

java.awt.Panel.AccessibleAWTPanel

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

java.lang.String[]	columnNames
java.lang.String[][]	example
javax.swing.JTabbedPane	tabbedPanelContainer

Fields inherited from class edu.ucla.stat.SOCR.analyses.gui.Analysis

ADD, addButton1, addButton2, addButton3, analysis, analysisDescription1, analysisDescription2, analysisDescription3, analysisDescription4, analysisDescription5, analysisDescription6, analysisDescription7, analysisName, analysisType, bPanel, CALCULATE, callServerAction, censorIndex, chartFactory, CLEAR, clearAction, columnModel, columnNumber, computeAction, controlPanel, currentDepIndex, currentIndepIndex, data, DATA, DATA_COLINEAR_MESSAGE, DATA_ERROR_MESSAGE, DATA_MISSING_MESSAGE, dataObject, dataPanel, dataTable, dataText, DEFAULT_DATA_PANEL_HEIGHT, DEFAULT_DATA_PANEL_WIDTH, DEFAULT_HEADER, DEFAULT_HEADER_1, DEFAULT_HEADER_2, DEFAULT_MAX_COLUMN_NUMBER, DEFAULT_PANE_HEIGHT, DEFAULT_PANE_WIDTH, DEFAULT_RESULT_PANEL_HEIGHT, DEFAULT_RESULT_PANEL_WIDTH, DENDRO, dendroPanel, dependentIndex, dependentPane, depLabel, depMax, dFormat, dTableHeader, EXAMPLE_1, EXAMPLE_2, EXAMPLE_3, EXAMPLE_4, EXAMPLE_5, EXAMPLE_6, EXAMPLE_7, exampleID, exampleInputAction, exampleLocalAction, exampleRandomAction, exampleRemoteAction, exampleSampleSize, exampleStaticAction1, exampleStaticAction2, exampleStaticAction3, exampleStaticAction4, exampleStaticAction5, exampleStaticAction6, exampleStaticAction7, fileLoadAction, FIRST_BUTTON_LABEL, font, FORMAT00001, FORMAT001, FORMATALL, GRAPH, graphPanel, graphRawData, graphSampleMean, graphZScore, groupNamesIndex, hasExample, hasInput, headerTable, hModel, hypothesisType, independentHeaderArray, independentIndex, independentLength, independentList, independentListCursor, indLabel, indMax, INPUT, inputPanel, inputXMLString, isInitialInput, leftAnalysisChoicePanel, leftPanel, listAdded, listCensor, listDepRemoved, listGroupNames, listIndepRemoved, listIndex, listTime, LOAD_FILE, mapDep, mapIndep, MAPPING, mappingInnerPanel, mappingPanel, NULL_VARIABLE_MESSAGE, onlineDescription, onlineHelp, outputFontFace, outputFontSize, plotHeight, plotWidth, RANDOM_EXAMPLE, randomDataStep, REMOVE, removeButton1, removeButton2, removeButton3, RESULT, RESULT_PANEL_COL_SIZE, RESULT_PANEL_ROW_SIZE, resultPanel, resultPanelTextArea, rightPanel, rowNumber, SECOND_BUTTON_LABEL, SELECT, selectedInd, selectPanel, SHOW_ALL, showData, showDendro, showGraph, showInput, showMapping, showSelect, showVisualize, stopNow, SURVIVAL_LIST_LENGTH, timeIndex, tModel, USE_SERVER, useGraph, useInputExample, useLocalExample, USER_INPUT, useRandomExample, userDataAction, useServerExample, useStaticExample, VARIABLE, VARIABLE_1, VARIABLE_2, VARIABLE_MISSING_MESSAGE, varLabel, VISUALIZE, visualizePanel, xmlOutputString

Fields inherited from class javax.swing.JApplet

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Clustering()

Method Summary

protected void	createActionComponents(javax.swing.JToolBar toolBar) Create the actions for the buttons
void	doAnalysis() This method defines the specific statistical Analysis to be carried our on the user specified data.
protected void	doGraph()
static java.util.LinkedList<java.lang.String[]>	getClusteringData()
java.awt.Container	getDisplayPane()
java.lang.String	getOnlineDescription() This method returns an online description of this Statistical Analysis.
void	init() Initialize the Analysis
java.lang.String	monoString(double s) convert a generic double s to a "nice" fixed length string
java.lang.String	monoString(int s) convert a generic integer s to a fixed length string
java.lang.String	monoString(java.lang.String s) convert a generic string s to a fixed length one.
void	propertyChange(java.beans.PropertyChangeEvent e) Implementation of PropertyChageListener.
void	reset() This method is the default reset method, that resets the analysis process to its initial state.
protected void	resetGraph()
void	start() This method sets up the analysis protocol, when the applet starts
void	updateResults()

Methods inherited from class edu.ucla.stat.SOCR.analyses.gui.Analysis

actionPerformed, addButtonCensor, addButtonDependent, addButtonGroupNames, addButtonTime, addTabbedPane, addTabbedPane, appendTableColumns, appendTableRows, chkDataIntegrity, format, getAppletInfo, getDistinctElements, getInstance, getOnlineHelp, getSelectedHeaderColumn, getStaticExample, getTime, hookTableAction, initialize, keyPressed, keyReleased, keyTyped, mouseClicked, mouseDragged, mouseEntered, mouseExited, mouseMoved, mousePressed, mouseReleased, paintTable, removeButtonCensor, removeButtonDependent, removeButtonDependentAll, removeButtonGroupNames, removeButtonIndependent, removeButtonIndependentAll, removeButtonTime, removeTabbedPane, resetDendro, resetMappingList, resetMappingListGUI, resetParameterSelect, resetTable, resetTableColumns, resetTableColumns, resetTableRows, resetVisualize, run, setDataPanel, setDecimalFormat, setDendroPanel, setFormat, setGraphPanel, setInputPanel, setMainPanel, setMappingPanel, setResultPanel, setSelectPanel, setStopNow, setTabbedPaneComponent, setVisualizePanel, step, stop, update, updateEditableHeader, updateExample, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JApplet

addImpl, createRootPane, getAccessibleContext, getContentPane, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isRootPaneCheckingEnabled, paramString, remove, repaint, setContentPane, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.applet.Applet

destroy, getAppletContext, getAudioClip, getAudioClip, getCodeBase, getDocumentBase, getImage, getImage, getLocale, getParameter, getParameterInfo, isActive, newAudioClip, play, play, resize, resize, setStub, showStatus

Methods inherited from class java.awt.Panel

addNotify

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getInsets, getLayout, getListeners, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, processEvent, remove, removeAll, removeContainerListener, removeNotify, setComponentZOrder, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getToolkit, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, reshape, setBackground, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setMinimumSize, setName, setPreferredSize, setSize, setSize, setVisible, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

example

public java.lang.String[][] example

columnNames

public java.lang.String[] columnNames

tabbedPanelContainer

public javax.swing.JTabbedPane tabbedPanelContainer

Constructor Detail

Clustering

public Clustering()

Method Detail

init

public void init()

Initialize the Analysis

Overrides:

init in class Analysis

createActionComponents

protected void createActionComponents(javax.swing.JToolBar toolBar)

Create the actions for the buttons

Overrides:

createActionComponents in class Analysis

start

public void start()

This method sets up the analysis protocol, when the applet starts

Overrides:

start in class java.applet.Applet

doAnalysis

public void doAnalysis()

This method defines the specific statistical Analysis to be carried our on the user specified data. ANOVA is done in this case.

Overrides:

doAnalysis in class Analysis

updateResults

public void updateResults()

Overrides:

updateResults in class Analysis

monoString

public java.lang.String monoString(java.lang.String s)

convert a generic string s to a fixed length one.

monoString

public java.lang.String monoString(double s)

convert a generic double s to a "nice" fixed length string

monoString

public java.lang.String monoString(int s)

convert a generic integer s to a fixed length string

reset

public void reset()

Description copied from class: Analysis

This method is the default reset method, that resets the analysis process to its initial state. It should be overridden by the specific analysis tools.

Overrides:

reset in class Analysis

propertyChange

public void propertyChange(java.beans.PropertyChangeEvent e)

Implementation of PropertyChageListener.

Specified by:

propertyChange in interface java.beans.PropertyChangeListener

getDisplayPane

public java.awt.Container getDisplayPane()

Overrides:

getDisplayPane in class Analysis

doGraph

protected void doGraph()

Overrides:

doGraph in class Analysis

resetGraph

protected void resetGraph()

Overrides:

resetGraph in class Analysis

getClusteringData

public static java.util.LinkedList<java.lang.String[]> getClusteringData()

getOnlineDescription

public java.lang.String getOnlineDescription()

Description copied from class: Analysis

This method returns an online description of this Statistical Analysis. It should be overwritten by each specific analysis method.

Overrides:

getOnlineDescription in class Analysis