edu.ucla.stat.SOCR.analyses.gui
Class Clustering

java.lang.Object
  extended by java.awt.Component
      extended by java.awt.Container
          extended by java.awt.Panel
              extended by java.applet.Applet
                  extended by javax.swing.JApplet
                      extended by edu.ucla.stat.SOCR.analyses.gui.Analysis
                          extended by edu.ucla.stat.SOCR.analyses.gui.Clustering
All Implemented Interfaces:
java.awt.event.ActionListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.beans.PropertyChangeListener, java.io.Serializable, java.lang.Runnable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer

public class Clustering
extends Analysis
implements java.beans.PropertyChangeListener

this class is for Logistic Regression only.

See Also:
Serialized Form

Nested Class Summary
 
Nested classes/interfaces inherited from class javax.swing.JApplet
javax.swing.JApplet.AccessibleJApplet
 
Nested classes/interfaces inherited from class java.applet.Applet
java.applet.Applet.AccessibleApplet
 
Nested classes/interfaces inherited from class java.awt.Panel
java.awt.Panel.AccessibleAWTPanel
 
Nested classes/interfaces inherited from class java.awt.Container
java.awt.Container.AccessibleAWTContainer
 
Nested classes/interfaces inherited from class java.awt.Component
java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy
 
Field Summary
 java.lang.String[] columnNames
           
 java.lang.String[][] example
           
 javax.swing.JTabbedPane tabbedPanelContainer
           
 
Fields inherited from class edu.ucla.stat.SOCR.analyses.gui.Analysis
ADD, addButton1, addButton2, addButton3, analysis, analysisDescription1, analysisDescription2, analysisDescription3, analysisDescription4, analysisDescription5, analysisDescription6, analysisDescription7, analysisName, analysisType, bPanel, CALCULATE, callServerAction, censorIndex, chartFactory, CLEAR, clearAction, columnModel, columnNumber, computeAction, controlPanel, currentDepIndex, currentIndepIndex, data, DATA, DATA_COLINEAR_MESSAGE, DATA_ERROR_MESSAGE, DATA_MISSING_MESSAGE, dataObject, dataPanel, dataTable, dataText, DEFAULT_DATA_PANEL_HEIGHT, DEFAULT_DATA_PANEL_WIDTH, DEFAULT_HEADER, DEFAULT_HEADER_1, DEFAULT_HEADER_2, DEFAULT_MAX_COLUMN_NUMBER, DEFAULT_PANE_HEIGHT, DEFAULT_PANE_WIDTH, DEFAULT_RESULT_PANEL_HEIGHT, DEFAULT_RESULT_PANEL_WIDTH, DENDRO, dendroPanel, dependentIndex, dependentPane, depLabel, depMax, dFormat, dTableHeader, EXAMPLE_1, EXAMPLE_2, EXAMPLE_3, EXAMPLE_4, EXAMPLE_5, EXAMPLE_6, EXAMPLE_7, exampleID, exampleInputAction, exampleLocalAction, exampleRandomAction, exampleRemoteAction, exampleSampleSize, exampleStaticAction1, exampleStaticAction2, exampleStaticAction3, exampleStaticAction4, exampleStaticAction5, exampleStaticAction6, exampleStaticAction7, fileLoadAction, FIRST_BUTTON_LABEL, font, FORMAT00001, FORMAT001, FORMATALL, GRAPH, graphPanel, graphRawData, graphSampleMean, graphZScore, groupNamesIndex, hasExample, hasInput, headerTable, hModel, hypothesisType, independentHeaderArray, independentIndex, independentLength, independentList, independentListCursor, indLabel, indMax, INPUT, inputPanel, inputXMLString, isInitialInput, leftAnalysisChoicePanel, leftPanel, listAdded, listCensor, listDepRemoved, listGroupNames, listIndepRemoved, listIndex, listTime, LOAD_FILE, mapDep, mapIndep, MAPPING, mappingInnerPanel, mappingPanel, NULL_VARIABLE_MESSAGE, onlineDescription, onlineHelp, outputFontFace, outputFontSize, plotHeight, plotWidth, RANDOM_EXAMPLE, randomDataStep, REMOVE, removeButton1, removeButton2, removeButton3, RESULT, RESULT_PANEL_COL_SIZE, RESULT_PANEL_ROW_SIZE, resultPanel, resultPanelTextArea, rightPanel, rowNumber, SECOND_BUTTON_LABEL, SELECT, selectedInd, selectPanel, SHOW_ALL, showData, showDendro, showGraph, showInput, showMapping, showSelect, showVisualize, stopNow, SURVIVAL_LIST_LENGTH, timeIndex, tModel, USE_SERVER, useGraph, useInputExample, useLocalExample, USER_INPUT, useRandomExample, userDataAction, useServerExample, useStaticExample, VARIABLE, VARIABLE_1, VARIABLE_2, VARIABLE_MISSING_MESSAGE, varLabel, VISUALIZE, visualizePanel, xmlOutputString
 
Fields inherited from class javax.swing.JApplet
accessibleContext, rootPane, rootPaneCheckingEnabled
 
Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT
 
Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH
 
Constructor Summary
Clustering()
           
 
Method Summary
protected  void createActionComponents(javax.swing.JToolBar toolBar)
          Create the actions for the buttons
 void doAnalysis()
          This method defines the specific statistical Analysis to be carried our on the user specified data.
protected  void doGraph()
           
static java.util.LinkedList<java.lang.String[]> getClusteringData()
           
 java.awt.Container getDisplayPane()
           
 java.lang.String getOnlineDescription()
          This method returns an online description of this Statistical Analysis.
 void init()
          Initialize the Analysis
 java.lang.String monoString(double s)
          convert a generic double s to a "nice" fixed length string
 java.lang.String monoString(int s)
          convert a generic integer s to a fixed length string
 java.lang.String monoString(java.lang.String s)
          convert a generic string s to a fixed length one.
 void propertyChange(java.beans.PropertyChangeEvent e)
          Implementation of PropertyChageListener.
 void reset()
          This method is the default reset method, that resets the analysis process to its initial state.
protected  void resetGraph()
           
 void start()
          This method sets up the analysis protocol, when the applet starts
 void updateResults()
           
 
Methods inherited from class edu.ucla.stat.SOCR.analyses.gui.Analysis
actionPerformed, addButtonCensor, addButtonDependent, addButtonGroupNames, addButtonTime, addTabbedPane, addTabbedPane, appendTableColumns, appendTableRows, chkDataIntegrity, format, getAppletInfo, getDistinctElements, getInstance, getOnlineHelp, getSelectedHeaderColumn, getStaticExample, getTime, hookTableAction, initialize, keyPressed, keyReleased, keyTyped, mouseClicked, mouseDragged, mouseEntered, mouseExited, mouseMoved, mousePressed, mouseReleased, paintTable, removeButtonCensor, removeButtonDependent, removeButtonDependentAll, removeButtonGroupNames, removeButtonIndependent, removeButtonIndependentAll, removeButtonTime, removeTabbedPane, resetDendro, resetMappingList, resetMappingListGUI, resetParameterSelect, resetTable, resetTableColumns, resetTableColumns, resetTableRows, resetVisualize, run, setDataPanel, setDecimalFormat, setDendroPanel, setFormat, setGraphPanel, setInputPanel, setMainPanel, setMappingPanel, setResultPanel, setSelectPanel, setStopNow, setTabbedPaneComponent, setVisualizePanel, step, stop, update, updateEditableHeader, updateExample, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened
 
Methods inherited from class javax.swing.JApplet
addImpl, createRootPane, getAccessibleContext, getContentPane, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isRootPaneCheckingEnabled, paramString, remove, repaint, setContentPane, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update
 
Methods inherited from class java.applet.Applet
destroy, getAppletContext, getAudioClip, getAudioClip, getCodeBase, getDocumentBase, getImage, getImage, getLocale, getParameter, getParameterInfo, isActive, newAudioClip, play, play, resize, resize, setStub, showStatus
 
Methods inherited from class java.awt.Panel
addNotify
 
Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getInsets, getLayout, getListeners, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, processEvent, remove, removeAll, removeContainerListener, removeNotify, setComponentZOrder, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusBackward, transferFocusDownCycle, validate, validateTree
 
Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getToolkit, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, reshape, setBackground, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setMinimumSize, setName, setPreferredSize, setSize, setSize, setVisible, show, show, size, toString, transferFocus, transferFocusUpCycle
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Field Detail

example

public java.lang.String[][] example

columnNames

public java.lang.String[] columnNames

tabbedPanelContainer

public javax.swing.JTabbedPane tabbedPanelContainer
Constructor Detail

Clustering

public Clustering()
Method Detail

init

public void init()
Initialize the Analysis

Overrides:
init in class Analysis

createActionComponents

protected void createActionComponents(javax.swing.JToolBar toolBar)
Create the actions for the buttons

Overrides:
createActionComponents in class Analysis

start

public void start()
This method sets up the analysis protocol, when the applet starts

Overrides:
start in class java.applet.Applet

doAnalysis

public void doAnalysis()
This method defines the specific statistical Analysis to be carried our on the user specified data. ANOVA is done in this case.

Overrides:
doAnalysis in class Analysis

updateResults

public void updateResults()
Overrides:
updateResults in class Analysis

monoString

public java.lang.String monoString(java.lang.String s)
convert a generic string s to a fixed length one.


monoString

public java.lang.String monoString(double s)
convert a generic double s to a "nice" fixed length string


monoString

public java.lang.String monoString(int s)
convert a generic integer s to a fixed length string


reset

public void reset()
Description copied from class: Analysis
This method is the default reset method, that resets the analysis process to its initial state. It should be overridden by the specific analysis tools.

Overrides:
reset in class Analysis

propertyChange

public void propertyChange(java.beans.PropertyChangeEvent e)
Implementation of PropertyChageListener.

Specified by:
propertyChange in interface java.beans.PropertyChangeListener

getDisplayPane

public java.awt.Container getDisplayPane()
Overrides:
getDisplayPane in class Analysis

doGraph

protected void doGraph()
Overrides:
doGraph in class Analysis

resetGraph

protected void resetGraph()
Overrides:
resetGraph in class Analysis

getClusteringData

public static java.util.LinkedList<java.lang.String[]> getClusteringData()

getOnlineDescription

public java.lang.String getOnlineDescription()
Description copied from class: Analysis
This method returns an online description of this Statistical Analysis. It should be overwritten by each specific analysis method.

Overrides:
getOnlineDescription in class Analysis