edu.ucla.stat.SOCR.analyses.gui
Class Analysis

java.lang.Object
  java.awt.Component
      java.awt.Container
          java.awt.Panel
              java.applet.Applet
                  javax.swing.JApplet
                      edu.ucla.stat.SOCR.analyses.gui.Analysis

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.lang.Runnable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer

Direct Known Subclasses:

AnovaOneWay, AnovaTwoWay, CategoricalAnalysis, ChiSquareContingencyTable, ChiSquareModelFit, Clustering, ConfidenceIntervalAnalysis, DichotomousProportion, FisherExact, FlignerKilleen, Friedman, KolmogorovSmirnoff, KruskalWallis, LogisticRegression, MultiLinearRegression, NormalPower, OneT, OneZ, SimpleLinearRegression, Survival, TwoIndependentT, TwoIndependentTPooled, TwoIndependentTUnpooled, TwoIndependentWilcoxon, TwoPairedSignedRank, TwoPairedSignTest, TwoPairedT

public class Analysis
extends javax.swing.JApplet
implements java.lang.Runnable, java.awt.event.MouseListener, java.awt.event.ActionListener, java.awt.event.MouseMotionListener, java.awt.event.WindowListener, java.awt.event.KeyListener

This class defines a basic type of Statistical Analysis procedure that can be subclassed by the specific types of analyses (e.g., ANOVA, Regression, prediction, etc.)

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JApplet

javax.swing.JApplet.AccessibleJApplet

Nested classes/interfaces inherited from class java.applet.Applet

java.applet.Applet.AccessibleApplet

Nested classes/interfaces inherited from class java.awt.Panel

java.awt.Panel.AccessibleAWTPanel

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

protected java.lang.String	ADD
javax.swing.JButton	addButton1
javax.swing.JButton	addButton2
javax.swing.JButton	addButton3
protected java.lang.Thread	analysis
protected java.lang.String	analysisDescription1
protected java.lang.String	analysisDescription2
protected java.lang.String	analysisDescription3
protected java.lang.String	analysisDescription4
protected java.lang.String	analysisDescription5
protected java.lang.String	analysisDescription6
protected java.lang.String	analysisDescription7
protected java.lang.String	analysisName
protected short	analysisType
protected javax.swing.JPanel	bPanel
protected java.lang.String	CALCULATE
protected javax.swing.Action	callServerAction
protected int	censorIndex
protected Chart	chartFactory
protected java.lang.String	CLEAR
protected javax.swing.Action	clearAction
protected javax.swing.table.TableColumnModel	columnModel
java.lang.String[]	columnNames
protected int	columnNumber
protected javax.swing.Action	computeAction
protected static javax.swing.JPanel	controlPanel
protected int	currentDepIndex
protected int	currentIndepIndex
protected Data	data
protected java.lang.String	DATA
protected java.lang.String	DATA_COLINEAR_MESSAGE
protected java.lang.String	DATA_ERROR_MESSAGE
protected java.lang.String	DATA_MISSING_MESSAGE
java.lang.Object[][]	dataObject
protected static javax.swing.JPanel	dataPanel
static javax.swing.JTable	dataTable
protected java.lang.String	dataText
static int	DEFAULT_DATA_PANEL_HEIGHT
static int	DEFAULT_DATA_PANEL_WIDTH
static java.lang.String	DEFAULT_HEADER
static java.lang.String	DEFAULT_HEADER_1
static java.lang.String	DEFAULT_HEADER_2
static int	DEFAULT_MAX_COLUMN_NUMBER
static int	DEFAULT_PANE_HEIGHT
static int	DEFAULT_PANE_WIDTH Start Variable Declaration
protected static int	DEFAULT_RESULT_PANEL_HEIGHT
protected static int	DEFAULT_RESULT_PANEL_WIDTH
protected java.lang.String	DENDRO
static javax.swing.JPanel	dendroPanel
protected int	dependentIndex
protected javax.swing.JScrollPane	dependentPane
protected javax.swing.JLabel	depLabel
protected int	depMax
protected java.text.DecimalFormat	dFormat
protected EditableHeader	dTableHeader
protected java.lang.String	EXAMPLE_1
protected java.lang.String	EXAMPLE_2
protected java.lang.String	EXAMPLE_3
protected java.lang.String	EXAMPLE_4
protected java.lang.String	EXAMPLE_5
protected java.lang.String	EXAMPLE_6
protected java.lang.String	EXAMPLE_7
protected short	exampleID
protected javax.swing.Action	exampleInputAction
protected javax.swing.Action	exampleLocalAction
protected javax.swing.Action	exampleRandomAction
protected javax.swing.Action	exampleRemoteAction
protected int	exampleSampleSize
protected javax.swing.Action	exampleStaticAction1 **************
protected javax.swing.Action	exampleStaticAction2
protected javax.swing.Action	exampleStaticAction3
protected javax.swing.Action	exampleStaticAction4
protected javax.swing.Action	exampleStaticAction5
protected javax.swing.Action	exampleStaticAction6
protected javax.swing.Action	exampleStaticAction7
protected javax.swing.Action	fileLoadAction
protected java.lang.String	FIRST_BUTTON_LABEL
static java.awt.Font	font
static java.lang.String	FORMAT00001
static java.lang.String	FORMAT001
static java.lang.String	FORMATALL
protected java.lang.String	GRAPH
protected static javax.swing.JPanel	graphPanel
protected NormalCurve	graphRawData
protected NormalCurve	graphSampleMean
protected NormalCurve	graphZScore
protected int	groupNamesIndex
protected boolean	hasExample
protected boolean	hasInput
static javax.swing.JTable	headerTable
static javax.swing.table.DefaultTableModel	hModel
protected java.lang.String	hypothesisType
protected java.lang.String[]	independentHeaderArray
protected int	independentIndex
protected int	independentLength
protected java.util.LinkedList<java.lang.Integer>	independentList
protected int	independentListCursor
protected javax.swing.JLabel	indLabel
protected int	indMax
protected java.lang.String	INPUT
protected static javax.swing.JPanel	inputPanel
protected java.lang.String	inputXMLString
protected boolean	isInitialInput
javax.swing.JPanel	leftAnalysisChoicePanel
protected javax.swing.JPanel	leftPanel
javax.swing.JList	listAdded
javax.swing.JList	listCensor
javax.swing.JList	listDepRemoved
javax.swing.JList	listGroupNames
javax.swing.JList	listIndepRemoved
int[]	listIndex
javax.swing.JList	listTime
protected java.lang.String	LOAD_FILE
protected boolean	mapDep
protected boolean	mapIndep
protected java.lang.String	MAPPING
protected static javax.swing.JPanel	mappingInnerPanel
protected static javax.swing.JPanel	mappingPanel
protected java.lang.String	NULL_VARIABLE_MESSAGE
protected java.lang.String	onlineDescription
protected java.lang.String	onlineHelp
protected static java.lang.String	outputFontFace
protected static int	outputFontSize
protected int	plotHeight
protected int	plotWidth
protected java.lang.String	RANDOM_EXAMPLE
protected static boolean	randomDataStep
protected java.lang.String	REMOVE
javax.swing.JButton	removeButton1
javax.swing.JButton	removeButton2
javax.swing.JButton	removeButton3
protected java.lang.String	RESULT
protected static int	RESULT_PANEL_COL_SIZE
protected static int	RESULT_PANEL_ROW_SIZE
protected static javax.swing.JPanel	resultPanel
javax.swing.JTextArea	resultPanelTextArea
protected javax.swing.JPanel	rightPanel
protected int	rowNumber
protected java.lang.String	SECOND_BUTTON_LABEL
protected java.lang.String	SELECT
int	selectedInd
protected static javax.swing.JPanel	selectPanel
protected java.lang.String	SHOW_ALL
protected boolean	showData
protected boolean	showDendro
protected boolean	showGraph
protected boolean	showInput
protected boolean	showMapping
protected boolean	showSelect
protected boolean	showVisualize
protected boolean	stopNow
static int	SURVIVAL_LIST_LENGTH
javax.swing.JTabbedPane	tabbedPanelContainer
protected int	timeIndex
static javax.swing.table.DefaultTableModel	tModel
protected java.lang.String	USE_SERVER
protected boolean	useGraph
protected boolean	useInputExample
protected boolean	useLocalExample
protected java.lang.String	USER_INPUT
protected boolean	useRandomExample flags that controls the actions
protected javax.swing.Action	userDataAction
protected boolean	useServerExample
protected boolean[]	useStaticExample
protected java.lang.String	VARIABLE
protected java.lang.String	VARIABLE_1
protected java.lang.String	VARIABLE_2
protected java.lang.String	VARIABLE_MISSING_MESSAGE
protected javax.swing.JLabel	varLabel
protected java.lang.String	VISUALIZE
protected static javax.swing.JPanel	visualizePanel
protected java.lang.String	xmlInputString
protected java.lang.String	xmlOutputString

Fields inherited from class javax.swing.JApplet

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Analysis()

Method Summary

void	actionPerformed(java.awt.event.ActionEvent event) This method handles the action events associated with the action buttons in the Analysis Control JTabbedPane (Panel).
protected void	addButtonCensor()
protected void	addButtonDependent()
protected void	addButtonGroupNames()
protected void	addButtonTime()
void	addTabbedPane(java.lang.String title, javax.swing.Icon icon, javax.swing.JComponent component, java.lang.String tip) This method add a new component to the tabbed panel.
void	addTabbedPane(java.lang.String name, javax.swing.JComponent c) This method add a new component to the tabbed panel.
void	appendTableColumns(int n)
void	appendTableRows(int n)
int	chkDataIntegrity()
protected void	createActionComponents(javax.swing.JToolBar toolBar)
void	doAnalysis() This method defines what the analysis really does, and should be overridden by the specific analysis tools.
protected void	doGraph()
java.lang.String	format(double x, java.lang.String precision)
java.lang.String	getAppletInfo() This method returns basic copyright, author, and other metadata information
java.awt.Container	getDisplayPane()
int	getDistinctElements(Matrix Cl)
static Analysis	getInstance(java.lang.String classname)
java.lang.String	getOnlineDescription() This method returns an online description of this Statistical Analysis.
java.lang.String	getOnlineHelp()
int	getSelectedHeaderColumn()
static ExampleData	getStaticExample(short analysisType, short exampleID)
int	getTime() This method gets the time parameter of the analysis process.
protected void	hookTableAction() Add customized table actions.
void	init() This method initializes the Analysis, by setting up the basic tabbedPanes.
void	initialize() used for some sublcass to initialize befrore be used
void	keyPressed(java.awt.event.KeyEvent e)
void	keyReleased(java.awt.event.KeyEvent e)
void	keyTyped(java.awt.event.KeyEvent e)
void	mouseClicked(java.awt.event.MouseEvent event) Mouse events
void	mouseDragged(java.awt.event.MouseEvent event)
void	mouseEntered(java.awt.event.MouseEvent event)
void	mouseExited(java.awt.event.MouseEvent event)
void	mouseMoved(java.awt.event.MouseEvent event) Mouse motion events
void	mousePressed(java.awt.event.MouseEvent event)
void	mouseReleased(java.awt.event.MouseEvent event)
void	paintTable(int[] lstInd)
protected void	removeButtonCensor()
protected void	removeButtonDependent()
protected void	removeButtonDependentAll()
protected void	removeButtonGroupNames()
protected void	removeButtonIndependent()
protected void	removeButtonIndependentAll()
protected void	removeButtonTime()
void	removeTabbedPane(int index) This method removes a component from the tabbed panel.
void	reset() This method is the default reset method, that resets the analysis process to its initial state.
protected void	resetDendro()
protected void	resetGraph()
void	resetMappingList()
void	resetMappingListGUI()
protected void	resetParameterSelect()
void	resetTable()
void	resetTableColumns(int n)
void	resetTableColumns(javax.swing.table.TableColumnModel columnModel)
void	resetTableRows(int n)
protected void	resetVisualize()
void	run() This method runs the analysis thread
protected void	setDataPanel()
void	setDecimalFormat(java.text.DecimalFormat d) This method sets the decimal format, so that the properties of the decimal format can then be changed
protected void	setDendroPanel()
void	setFormat(java.lang.String f)
protected void	setGraphPanel()
protected void	setInputPanel()
void	setMainPanel() Sets the amin Stat Analysis GUI with left-analysis-choice & right-data-cointrol Jpanel's.
protected void	setMappingPanel()
protected void	setResultPanel()
protected void	setSelectPanel()
void	setStopNow(boolean b) This method defines the boolean variable that stops the analysis, when the process is in run mode
void	setTabbedPaneComponent(int index, javax.swing.JComponent c) This method sets a component in the tabbed panel to a specified new component.
protected void	setVisualizePanel()
void	step() This method is the default step method, that runs the analysis one time unit.
void	stop() This method stops the analysis thread
void	update() This method is the default update method and defines how the display is updated.
void	updateEditableHeader(javax.swing.table.TableColumnModel aColumnModel)
void	updateExample(ExampleData example)
void	updateResults()
void	windowActivated(java.awt.event.WindowEvent event)
void	windowClosed(java.awt.event.WindowEvent event)
void	windowClosing(java.awt.event.WindowEvent event)
void	windowDeactivated(java.awt.event.WindowEvent event)
void	windowDeiconified(java.awt.event.WindowEvent event)
void	windowIconified(java.awt.event.WindowEvent event)
void	windowOpened(java.awt.event.WindowEvent event) Window events

Methods inherited from class javax.swing.JApplet

addImpl, createRootPane, getAccessibleContext, getContentPane, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isRootPaneCheckingEnabled, paramString, remove, repaint, setContentPane, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.applet.Applet

destroy, getAppletContext, getAudioClip, getAudioClip, getCodeBase, getDocumentBase, getImage, getImage, getLocale, getParameter, getParameterInfo, isActive, newAudioClip, play, play, resize, resize, setStub, showStatus, start

Methods inherited from class java.awt.Panel

addNotify

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getInsets, getLayout, getListeners, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, processEvent, remove, removeAll, removeContainerListener, removeNotify, setComponentZOrder, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getToolkit, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, reshape, setBackground, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setMinimumSize, setName, setPreferredSize, setSize, setSize, setVisible, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

DEFAULT_PANE_WIDTH

public static final int DEFAULT_PANE_WIDTH

Start Variable Declaration

DEFAULT_PANE_HEIGHT

public static final int DEFAULT_PANE_HEIGHT

See Also:

Constant Field Values

DEFAULT_DATA_PANEL_WIDTH

public static final int DEFAULT_DATA_PANEL_WIDTH

See Also:

Constant Field Values

DEFAULT_DATA_PANEL_HEIGHT

public static final int DEFAULT_DATA_PANEL_HEIGHT

See Also:

Constant Field Values

DEFAULT_RESULT_PANEL_WIDTH

protected static final int DEFAULT_RESULT_PANEL_WIDTH

See Also:

Constant Field Values

DEFAULT_RESULT_PANEL_HEIGHT

protected static final int DEFAULT_RESULT_PANEL_HEIGHT

See Also:

Constant Field Values

RESULT_PANEL_ROW_SIZE

protected static final int RESULT_PANEL_ROW_SIZE

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Constant Field Values

RESULT_PANEL_COL_SIZE

protected static final int RESULT_PANEL_COL_SIZE

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Constant Field Values

EXAMPLE_1

protected final java.lang.String EXAMPLE_1

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Constant Field Values

EXAMPLE_2

protected final java.lang.String EXAMPLE_2

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Constant Field Values

EXAMPLE_3

protected final java.lang.String EXAMPLE_3

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Constant Field Values

EXAMPLE_4

protected final java.lang.String EXAMPLE_4

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Constant Field Values

EXAMPLE_5

protected final java.lang.String EXAMPLE_5

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Constant Field Values

EXAMPLE_6

protected final java.lang.String EXAMPLE_6

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Constant Field Values

EXAMPLE_7

protected final java.lang.String EXAMPLE_7

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Constant Field Values

VARIABLE

protected final java.lang.String VARIABLE

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Constant Field Values

VARIABLE_1

protected final java.lang.String VARIABLE_1

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Constant Field Values

VARIABLE_2

protected final java.lang.String VARIABLE_2

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Constant Field Values

CALCULATE

protected final java.lang.String CALCULATE

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Constant Field Values

CLEAR

protected final java.lang.String CLEAR

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Constant Field Values

LOAD_FILE

protected final java.lang.String LOAD_FILE

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Constant Field Values

USER_INPUT

protected final java.lang.String USER_INPUT

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Constant Field Values

USE_SERVER

protected final java.lang.String USE_SERVER

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Constant Field Values

DATA

protected final java.lang.String DATA

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Constant Field Values

RESULT

protected final java.lang.String RESULT

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Constant Field Values

GRAPH

protected final java.lang.String GRAPH

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Constant Field Values

DENDRO

protected final java.lang.String DENDRO

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Constant Field Values

MAPPING

protected final java.lang.String MAPPING

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Constant Field Values

SELECT

protected final java.lang.String SELECT

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Constant Field Values

ADD

protected final java.lang.String ADD

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Constant Field Values

REMOVE

protected final java.lang.String REMOVE

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Constant Field Values

VISUALIZE

protected final java.lang.String VISUALIZE

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Constant Field Values

INPUT

protected java.lang.String INPUT

SHOW_ALL

protected final java.lang.String SHOW_ALL

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Constant Field Values

showData

protected boolean showData

showInput

protected boolean showInput

showMapping

protected boolean showMapping

showVisualize

protected boolean showVisualize

showSelect

protected boolean showSelect

showGraph

protected boolean showGraph

showDendro

protected boolean showDendro

RANDOM_EXAMPLE

protected final java.lang.String RANDOM_EXAMPLE

See Also:

Constant Field Values

FIRST_BUTTON_LABEL

protected java.lang.String FIRST_BUTTON_LABEL

SECOND_BUTTON_LABEL

protected java.lang.String SECOND_BUTTON_LABEL

DEFAULT_HEADER

public static final java.lang.String DEFAULT_HEADER

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Constant Field Values

DEFAULT_HEADER_1

public static final java.lang.String DEFAULT_HEADER_1

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Constant Field Values

DEFAULT_HEADER_2

public static final java.lang.String DEFAULT_HEADER_2

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Constant Field Values

DATA_MISSING_MESSAGE

protected final java.lang.String DATA_MISSING_MESSAGE

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Constant Field Values

VARIABLE_MISSING_MESSAGE

protected final java.lang.String VARIABLE_MISSING_MESSAGE

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Constant Field Values

DATA_COLINEAR_MESSAGE

protected final java.lang.String DATA_COLINEAR_MESSAGE

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Constant Field Values

DATA_ERROR_MESSAGE

protected final java.lang.String DATA_ERROR_MESSAGE

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Constant Field Values

NULL_VARIABLE_MESSAGE

protected final java.lang.String NULL_VARIABLE_MESSAGE

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Constant Field Values

outputFontFace

protected static final java.lang.String outputFontFace

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Constant Field Values

outputFontSize

protected static final int outputFontSize

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Constant Field Values

SURVIVAL_LIST_LENGTH

public static final int SURVIVAL_LIST_LENGTH

See Also:

Constant Field Values

onlineDescription

protected java.lang.String onlineDescription

onlineHelp

protected java.lang.String onlineHelp

independentLength

protected int independentLength

plotWidth

protected int plotWidth

plotHeight

protected int plotHeight

independentIndex

protected int independentIndex

dependentIndex

protected int dependentIndex

timeIndex

protected int timeIndex

censorIndex

protected int censorIndex

groupNamesIndex

protected int groupNamesIndex

analysisName

protected java.lang.String analysisName

useRandomExample

protected boolean useRandomExample

flags that controls the actions

useLocalExample

protected boolean useLocalExample

useInputExample

protected boolean useInputExample

useServerExample

protected boolean useServerExample

useGraph

protected boolean useGraph

useStaticExample

protected boolean[] useStaticExample

isInitialInput

protected boolean isInitialInput

hasExample

protected boolean hasExample

hasInput

protected boolean hasInput

exampleStaticAction1

protected javax.swing.Action exampleStaticAction1

**************

exampleStaticAction2

protected javax.swing.Action exampleStaticAction2

exampleStaticAction3

protected javax.swing.Action exampleStaticAction3

exampleStaticAction4

protected javax.swing.Action exampleStaticAction4

exampleStaticAction5

protected javax.swing.Action exampleStaticAction5

exampleStaticAction6

protected javax.swing.Action exampleStaticAction6

exampleStaticAction7

protected javax.swing.Action exampleStaticAction7

exampleRandomAction

protected javax.swing.Action exampleRandomAction

exampleLocalAction

protected javax.swing.Action exampleLocalAction

exampleRemoteAction

protected javax.swing.Action exampleRemoteAction

exampleInputAction

protected javax.swing.Action exampleInputAction

callServerAction

protected javax.swing.Action callServerAction

computeAction

protected javax.swing.Action computeAction

clearAction

protected javax.swing.Action clearAction

userDataAction

protected javax.swing.Action userDataAction

fileLoadAction

protected javax.swing.Action fileLoadAction

analysisType

protected short analysisType

exampleID

protected short exampleID

analysisDescription1

protected java.lang.String analysisDescription1

analysisDescription2

protected java.lang.String analysisDescription2

analysisDescription3

protected java.lang.String analysisDescription3

analysisDescription4

protected java.lang.String analysisDescription4

analysisDescription5

protected java.lang.String analysisDescription5

analysisDescription6

protected java.lang.String analysisDescription6

analysisDescription7

protected java.lang.String analysisDescription7

independentHeaderArray

protected java.lang.String[] independentHeaderArray

exampleSampleSize

protected int exampleSampleSize

selectedInd

public int selectedInd

dataTable

public static javax.swing.JTable dataTable

headerTable

public static javax.swing.JTable headerTable

dTableHeader

protected EditableHeader dTableHeader

dataObject

public java.lang.Object[][] dataObject

dataText

protected java.lang.String dataText

DEFAULT_MAX_COLUMN_NUMBER

public static int DEFAULT_MAX_COLUMN_NUMBER

columnNumber

protected int columnNumber

rowNumber

protected int rowNumber

columnNames

public java.lang.String[] columnNames

tModel

public static javax.swing.table.DefaultTableModel tModel

hModel

public static javax.swing.table.DefaultTableModel hModel

controlPanel

protected static javax.swing.JPanel controlPanel

dataPanel

protected static javax.swing.JPanel dataPanel

resultPanel

protected static javax.swing.JPanel resultPanel

graphPanel

protected static javax.swing.JPanel graphPanel

mappingInnerPanel

protected static javax.swing.JPanel mappingInnerPanel

mappingPanel

protected static javax.swing.JPanel mappingPanel

inputPanel

protected static javax.swing.JPanel inputPanel

selectPanel

protected static javax.swing.JPanel selectPanel

visualizePanel

protected static javax.swing.JPanel visualizePanel

dendroPanel

public static javax.swing.JPanel dendroPanel

bPanel

protected javax.swing.JPanel bPanel

resultPanelTextArea

public javax.swing.JTextArea resultPanelTextArea

columnModel

protected javax.swing.table.TableColumnModel columnModel

listAdded

public javax.swing.JList listAdded

listDepRemoved

public javax.swing.JList listDepRemoved

listIndepRemoved

public javax.swing.JList listIndepRemoved

listTime

public javax.swing.JList listTime

listCensor

public javax.swing.JList listCensor

listGroupNames

public javax.swing.JList listGroupNames

addButton1

public javax.swing.JButton addButton1

addButton2

public javax.swing.JButton addButton2

addButton3

public javax.swing.JButton addButton3

removeButton1

public javax.swing.JButton removeButton1

removeButton2

public javax.swing.JButton removeButton2

removeButton3

public javax.swing.JButton removeButton3

depMax

protected int depMax

indMax

protected int indMax

currentDepIndex

protected int currentDepIndex

currentIndepIndex

protected int currentIndepIndex

independentList

protected java.util.LinkedList<java.lang.Integer> independentList

mapDep

protected boolean mapDep

mapIndep

protected boolean mapIndep

independentListCursor

protected int independentListCursor

listIndex

public int[] listIndex

dependentPane

protected javax.swing.JScrollPane dependentPane

analysis

protected java.lang.Thread analysis

stopNow

protected boolean stopNow

tabbedPanelContainer

public javax.swing.JTabbedPane tabbedPanelContainer

chartFactory

protected Chart chartFactory

font

public static java.awt.Font font

FORMAT001

public static java.lang.String FORMAT001

FORMAT00001

public static java.lang.String FORMAT00001

FORMATALL

public static java.lang.String FORMATALL

dFormat

protected java.text.DecimalFormat dFormat

leftAnalysisChoicePanel

public javax.swing.JPanel leftAnalysisChoicePanel

depLabel

protected javax.swing.JLabel depLabel

indLabel

protected javax.swing.JLabel indLabel

varLabel

protected javax.swing.JLabel varLabel

inputXMLString

protected java.lang.String inputXMLString

data

protected Data data

xmlInputString

protected java.lang.String xmlInputString

xmlOutputString

protected java.lang.String xmlOutputString

randomDataStep

protected static boolean randomDataStep

hypothesisType

protected java.lang.String hypothesisType

graphRawData

protected NormalCurve graphRawData

graphSampleMean

protected NormalCurve graphSampleMean

graphZScore

protected NormalCurve graphZScore

leftPanel

protected javax.swing.JPanel leftPanel

rightPanel

protected javax.swing.JPanel rightPanel

Constructor Detail

Analysis

public Analysis()

Method Detail

setFormat

public void setFormat(java.lang.String f)

init

public void init()

This method initializes the Analysis, by setting up the basic tabbedPanes.

Overrides:

init in class java.applet.Applet

setDataPanel

protected void setDataPanel()

hookTableAction

protected void hookTableAction()

Add customized table actions. Clicking tab in the last cell will add one new column. Clicking return in the last cell will add one new row.

resetTableColumns

public void resetTableColumns(int n)

resetTableColumns

public void resetTableColumns(javax.swing.table.TableColumnModel columnModel)

setResultPanel

protected void setResultPanel()

setGraphPanel

protected void setGraphPanel()

setDendroPanel

protected void setDendroPanel()

setVisualizePanel

protected void setVisualizePanel()

setSelectPanel

protected void setSelectPanel()

setInputPanel

protected void setInputPanel()

setMainPanel

public void setMainPanel()

Sets the amin Stat Analysis GUI with left-analysis-choice & right-data-cointrol Jpanel's.

getAppletInfo

public java.lang.String getAppletInfo()

This method returns basic copyright, author, and other metadata information

Overrides:

getAppletInfo in class java.applet.Applet

format

public java.lang.String format(double x,
                               java.lang.String precision)

setDecimalFormat

public void setDecimalFormat(java.text.DecimalFormat d)

This method sets the decimal format, so that the properties of the decimal format can then be changed

addTabbedPane

public void addTabbedPane(java.lang.String name,
                          javax.swing.JComponent c)

This method add a new component to the tabbed panel.

addTabbedPane

public void addTabbedPane(java.lang.String title,
                          javax.swing.Icon icon,
                          javax.swing.JComponent component,
                          java.lang.String tip)

This method add a new component to the tabbed panel.

removeTabbedPane

public void removeTabbedPane(int index)

This method removes a component from the tabbed panel.

setTabbedPaneComponent

public void setTabbedPaneComponent(int index,
                                   javax.swing.JComponent c)

This method sets a component in the tabbed panel to a specified new component.

getTime

public int getTime()

This method gets the time parameter of the analysis process. May have to be overwritten .

run

public void run()

This method runs the analysis thread

Specified by:

run in interface java.lang.Runnable

stop

public void stop()

This method stops the analysis thread

Overrides:

stop in class java.applet.Applet

setStopNow

public void setStopNow(boolean b)

This method defines the boolean variable that stops the analysis, when the process is in run mode

update

public void update()

This method is the default update method and defines how the display is updated. This method should be overridden by the specific analysis.

reset

public void reset()

This method is the default reset method, that resets the analysis process to its initial state. It should be overridden by the specific analysis tools.

updateEditableHeader

public void updateEditableHeader(javax.swing.table.TableColumnModel aColumnModel)

getSelectedHeaderColumn

public int getSelectedHeaderColumn()

resetTable

public void resetTable()

resetMappingList

public void resetMappingList()

resetMappingListGUI

public void resetMappingListGUI()

doAnalysis

public void doAnalysis()

This method defines what the analysis really does, and should be overridden by the specific analysis tools.

updateResults

public void updateResults()

step

public void step()

This method is the default step method, that runs the analysis one time unit. This method may be overridden by the specific analysis tools.

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent event)

This method handles the action events associated with the action buttons in the Analysis Control JTabbedPane (Panel). It needs to overridden by the specific analysis tools.

Specified by:

actionPerformed in interface java.awt.event.ActionListener

addButtonDependent

protected void addButtonDependent()

removeButtonDependent

protected void removeButtonDependent()

removeButtonIndependent

protected void removeButtonIndependent()

removeButtonDependentAll

protected void removeButtonDependentAll()

removeButtonIndependentAll

protected void removeButtonIndependentAll()

getOnlineDescription

public java.lang.String getOnlineDescription()

This method returns an online description of this Statistical Analysis. It should be overwritten by each specific analysis method.

getOnlineHelp

public java.lang.String getOnlineHelp()

mouseClicked

public void mouseClicked(java.awt.event.MouseEvent event)

Mouse events

Specified by:

mouseClicked in interface java.awt.event.MouseListener

mouseEntered

public void mouseEntered(java.awt.event.MouseEvent event)

Specified by:

mouseEntered in interface java.awt.event.MouseListener

mouseExited

public void mouseExited(java.awt.event.MouseEvent event)

Specified by:

mouseExited in interface java.awt.event.MouseListener

mousePressed

public void mousePressed(java.awt.event.MouseEvent event)

Specified by:

mousePressed in interface java.awt.event.MouseListener

mouseReleased

public void mouseReleased(java.awt.event.MouseEvent event)

Specified by:

mouseReleased in interface java.awt.event.MouseListener

mouseMoved

public void mouseMoved(java.awt.event.MouseEvent event)

Mouse motion events

Specified by:

mouseMoved in interface java.awt.event.MouseMotionListener

mouseDragged

public void mouseDragged(java.awt.event.MouseEvent event)

Specified by:

mouseDragged in interface java.awt.event.MouseMotionListener

windowOpened

public void windowOpened(java.awt.event.WindowEvent event)

Window events

Specified by:

windowOpened in interface java.awt.event.WindowListener

windowClosing

public void windowClosing(java.awt.event.WindowEvent event)

Specified by:

windowClosing in interface java.awt.event.WindowListener

windowClosed

public void windowClosed(java.awt.event.WindowEvent event)

Specified by:

windowClosed in interface java.awt.event.WindowListener

windowIconified

public void windowIconified(java.awt.event.WindowEvent event)

Specified by:

windowIconified in interface java.awt.event.WindowListener

windowDeiconified

public void windowDeiconified(java.awt.event.WindowEvent event)

Specified by:

windowDeiconified in interface java.awt.event.WindowListener

windowActivated

public void windowActivated(java.awt.event.WindowEvent event)

Specified by:

windowActivated in interface java.awt.event.WindowListener

windowDeactivated

public void windowDeactivated(java.awt.event.WindowEvent event)

Specified by:

windowDeactivated in interface java.awt.event.WindowListener

setMappingPanel

protected void setMappingPanel()

paintTable

public void paintTable(int[] lstInd)

appendTableRows

public void appendTableRows(int n)

resetTableRows

public void resetTableRows(int n)

appendTableColumns

public void appendTableColumns(int n)

getDistinctElements

public int getDistinctElements(Matrix Cl)

updateExample

public void updateExample(ExampleData example)

chkDataIntegrity

public int chkDataIntegrity()

getInstance

public static Analysis getInstance(java.lang.String classname)
                            throws java.lang.Exception

Throws:

java.lang.Exception

getDisplayPane

public java.awt.Container getDisplayPane()

initialize

public void initialize()

used for some sublcass to initialize befrore be used

createActionComponents

protected void createActionComponents(javax.swing.JToolBar toolBar)

doGraph

protected void doGraph()

resetGraph

protected void resetGraph()

resetDendro

protected void resetDendro()

resetVisualize

protected void resetVisualize()

resetParameterSelect

protected void resetParameterSelect()

addButtonTime

protected void addButtonTime()

removeButtonTime

protected void removeButtonTime()

addButtonCensor

protected void addButtonCensor()

removeButtonCensor

protected void removeButtonCensor()

addButtonGroupNames

protected void addButtonGroupNames()

removeButtonGroupNames

protected void removeButtonGroupNames()

getStaticExample

public static ExampleData getStaticExample(short analysisType,
                                           short exampleID)

keyPressed

public void keyPressed(java.awt.event.KeyEvent e)

Specified by:

keyPressed in interface java.awt.event.KeyListener

keyReleased

public void keyReleased(java.awt.event.KeyEvent e)

Specified by:

keyReleased in interface java.awt.event.KeyListener

keyTyped

public void keyTyped(java.awt.event.KeyEvent e)

Specified by:

keyTyped in interface java.awt.event.KeyListener