edu.ucla.stat.SOCR.analyses.gui
Class FisherExact

java.lang.Object
  java.awt.Component
      java.awt.Container
          java.awt.Panel
              java.applet.Applet
                  javax.swing.JApplet
                      edu.ucla.stat.SOCR.analyses.gui.Analysis
                          edu.ucla.stat.SOCR.analyses.gui.FisherExact

All Implemented Interfaces:

java.awt.event.ActionListener, java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.WindowListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.beans.PropertyChangeListener, java.io.Serializable, java.lang.Runnable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.RootPaneContainer

public class FisherExact
extends Analysis
implements java.awt.event.MouseListener, java.awt.event.ActionListener, java.awt.event.KeyListener, java.awt.event.MouseMotionListener, java.beans.PropertyChangeListener

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JApplet

javax.swing.JApplet.AccessibleJApplet

Nested classes/interfaces inherited from class java.applet.Applet

java.applet.Applet.AccessibleApplet

Nested classes/interfaces inherited from class java.awt.Panel

java.awt.Panel.AccessibleAWTPanel

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields inherited from class edu.ucla.stat.SOCR.analyses.gui.Analysis

ADD, addButton1, addButton2, addButton3, analysis, analysisDescription1, analysisDescription2, analysisDescription3, analysisDescription4, analysisDescription5, analysisDescription6, analysisDescription7, analysisName, analysisType, bPanel, CALCULATE, callServerAction, censorIndex, chartFactory, CLEAR, clearAction, columnModel, columnNames, columnNumber, computeAction, controlPanel, currentDepIndex, currentIndepIndex, data, DATA, DATA_COLINEAR_MESSAGE, DATA_ERROR_MESSAGE, DATA_MISSING_MESSAGE, dataObject, dataPanel, dataTable, dataText, DEFAULT_DATA_PANEL_HEIGHT, DEFAULT_DATA_PANEL_WIDTH, DEFAULT_HEADER, DEFAULT_HEADER_1, DEFAULT_HEADER_2, DEFAULT_MAX_COLUMN_NUMBER, DEFAULT_PANE_HEIGHT, DEFAULT_PANE_WIDTH, DEFAULT_RESULT_PANEL_HEIGHT, DEFAULT_RESULT_PANEL_WIDTH, DENDRO, dendroPanel, dependentIndex, dependentPane, depLabel, depMax, dFormat, dTableHeader, EXAMPLE_1, EXAMPLE_2, EXAMPLE_3, EXAMPLE_4, EXAMPLE_5, EXAMPLE_6, EXAMPLE_7, exampleID, exampleInputAction, exampleLocalAction, exampleRandomAction, exampleRemoteAction, exampleSampleSize, exampleStaticAction1, exampleStaticAction2, exampleStaticAction3, exampleStaticAction4, exampleStaticAction5, exampleStaticAction6, exampleStaticAction7, fileLoadAction, FIRST_BUTTON_LABEL, font, FORMAT00001, FORMAT001, FORMATALL, GRAPH, graphPanel, graphRawData, graphSampleMean, graphZScore, groupNamesIndex, hasExample, hasInput, headerTable, hModel, hypothesisType, independentHeaderArray, independentIndex, independentLength, independentList, independentListCursor, indLabel, indMax, INPUT, inputPanel, inputXMLString, isInitialInput, leftAnalysisChoicePanel, leftPanel, listAdded, listCensor, listDepRemoved, listGroupNames, listIndepRemoved, listIndex, listTime, LOAD_FILE, mapDep, mapIndep, MAPPING, mappingInnerPanel, mappingPanel, NULL_VARIABLE_MESSAGE, onlineDescription, onlineHelp, outputFontFace, outputFontSize, plotHeight, plotWidth, RANDOM_EXAMPLE, randomDataStep, REMOVE, removeButton1, removeButton2, removeButton3, RESULT, RESULT_PANEL_COL_SIZE, RESULT_PANEL_ROW_SIZE, resultPanel, resultPanelTextArea, rightPanel, SECOND_BUTTON_LABEL, SELECT, selectedInd, selectPanel, SHOW_ALL, showData, showDendro, showGraph, showInput, showMapping, showSelect, showVisualize, stopNow, SURVIVAL_LIST_LENGTH, tabbedPanelContainer, timeIndex, tModel, USE_SERVER, useGraph, useInputExample, useLocalExample, USER_INPUT, useRandomExample, userDataAction, useServerExample, useStaticExample, VARIABLE, VARIABLE_1, VARIABLE_2, VARIABLE_MISSING_MESSAGE, varLabel, VISUALIZE, visualizePanel, xmlInputString, xmlOutputString

Fields inherited from class javax.swing.JApplet

accessibleContext, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

FisherExact()

Method Summary

void	actionPerformed(java.awt.event.ActionEvent event) This method handles the action events associated with the action buttons in the Analysis Control JTabbedPane (Panel).
protected void	createActionComponents(javax.swing.JToolBar toolBar) Create the actions for the buttons
void	doAnalysis() This method defines the specific statistical Analysis to be carried our on the user specified data.
java.awt.Container	getDisplayPane()
java.lang.String	getOnlineDescription() This method returns an online description of this Statistical Analysis.
void	init() Initialize the Analysis
void	keyPressed(java.awt.event.KeyEvent event)
void	keyReleased(java.awt.event.KeyEvent event)
void	keyTyped(java.awt.event.KeyEvent event)
java.lang.String	monoString(double s) convert a generic double s to a "nice" fixed length string
java.lang.String	monoString(int s) convert a generic integer s to a fixed length string
java.lang.String	monoString(java.lang.String s) convert a generic string s to a fixed length one.
void	mouseClicked(java.awt.event.MouseEvent event) Mouse events
void	mouseExited(java.awt.event.MouseEvent event)
void	mousePressed(java.awt.event.MouseEvent event)
void	mouseReleased(java.awt.event.MouseEvent event)
void	propertyChange(java.beans.PropertyChangeEvent e) Implementation of PropertyChageListener.
void	reset() This method is the default reset method, that resets the analysis process to its initial state.
protected void	setInputPanel()
void	start() This method sets up the analysis protocol, when the applet starts
void	updateResults()

Methods inherited from class edu.ucla.stat.SOCR.analyses.gui.Analysis

addButtonCensor, addButtonDependent, addButtonGroupNames, addButtonTime, addTabbedPane, addTabbedPane, appendTableColumns, appendTableRows, chkDataIntegrity, doGraph, format, getAppletInfo, getDistinctElements, getInstance, getOnlineHelp, getSelectedHeaderColumn, getStaticExample, getTime, hookTableAction, initialize, mouseDragged, mouseEntered, mouseMoved, paintTable, removeButtonCensor, removeButtonDependent, removeButtonDependentAll, removeButtonGroupNames, removeButtonIndependent, removeButtonIndependentAll, removeButtonTime, removeTabbedPane, resetDendro, resetGraph, resetMappingList, resetMappingListGUI, resetParameterSelect, resetTable, resetTableColumns, resetTableColumns, resetTableRows, resetVisualize, run, setDataPanel, setDecimalFormat, setDendroPanel, setFormat, setGraphPanel, setMainPanel, setMappingPanel, setResultPanel, setSelectPanel, setStopNow, setTabbedPaneComponent, setVisualizePanel, step, stop, update, updateEditableHeader, updateExample, windowActivated, windowClosed, windowClosing, windowDeactivated, windowDeiconified, windowIconified, windowOpened

Methods inherited from class javax.swing.JApplet

addImpl, createRootPane, getAccessibleContext, getContentPane, getGlassPane, getGraphics, getJMenuBar, getLayeredPane, getRootPane, getTransferHandler, isRootPaneCheckingEnabled, paramString, remove, repaint, setContentPane, setGlassPane, setJMenuBar, setLayeredPane, setLayout, setRootPane, setRootPaneCheckingEnabled, setTransferHandler, update

Methods inherited from class java.applet.Applet

destroy, getAppletContext, getAudioClip, getAudioClip, getCodeBase, getDocumentBase, getImage, getImage, getLocale, getParameter, getParameterInfo, isActive, newAudioClip, play, play, resize, resize, setStub, showStatus

Methods inherited from class java.awt.Panel

addNotify

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getInsets, getLayout, getListeners, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, preferredSize, print, printComponents, processContainerEvent, processEvent, remove, removeAll, removeContainerListener, removeNotify, setComponentZOrder, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getToolkit, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, reshape, setBackground, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setMaximumSize, setMinimumSize, setName, setPreferredSize, setSize, setSize, setVisible, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.event.MouseListener

mouseEntered

Methods inherited from interface java.awt.event.MouseMotionListener

mouseDragged, mouseMoved

Constructor Detail

FisherExact

public FisherExact()

Method Detail

init

public void init()

Initialize the Analysis

Overrides:

init in class Analysis

createActionComponents

protected void createActionComponents(javax.swing.JToolBar toolBar)

Create the actions for the buttons

Overrides:

createActionComponents in class Analysis

start

public void start()

This method sets up the analysis protocol, when the applet starts

Overrides:

start in class java.applet.Applet

doAnalysis

public void doAnalysis()

This method defines the specific statistical Analysis to be carried our on the user specified data. ANOVA is done in this case.

Overrides:

doAnalysis in class Analysis

updateResults

public void updateResults()

Overrides:

updateResults in class Analysis

monoString

public java.lang.String monoString(java.lang.String s)

convert a generic string s to a fixed length one.

monoString

public java.lang.String monoString(double s)

convert a generic double s to a "nice" fixed length string

monoString

public java.lang.String monoString(int s)

convert a generic integer s to a fixed length string

propertyChange

public void propertyChange(java.beans.PropertyChangeEvent e)

Implementation of PropertyChageListener.

Specified by:

propertyChange in interface java.beans.PropertyChangeListener

getDisplayPane

public java.awt.Container getDisplayPane()

Overrides:

getDisplayPane in class Analysis

getOnlineDescription

public java.lang.String getOnlineDescription()

Description copied from class: Analysis

This method returns an online description of this Statistical Analysis. It should be overwritten by each specific analysis method.

Overrides:

getOnlineDescription in class Analysis

setInputPanel

protected void setInputPanel()

Overrides:

setInputPanel in class Analysis

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent event)

Description copied from class: Analysis

This method handles the action events associated with the action buttons in the Analysis Control JTabbedPane (Panel). It needs to overridden by the specific analysis tools.

Specified by:

actionPerformed in interface java.awt.event.ActionListener

Overrides:

actionPerformed in class Analysis

mouseClicked

public void mouseClicked(java.awt.event.MouseEvent event)

Description copied from class: Analysis

Mouse events

Specified by:

mouseClicked in interface java.awt.event.MouseListener

Overrides:

mouseClicked in class Analysis

mouseReleased

public void mouseReleased(java.awt.event.MouseEvent event)

Specified by:

mouseReleased in interface java.awt.event.MouseListener

Overrides:

mouseReleased in class Analysis

mouseExited

public void mouseExited(java.awt.event.MouseEvent event)

Specified by:

mouseExited in interface java.awt.event.MouseListener

Overrides:

mouseExited in class Analysis

mousePressed

public void mousePressed(java.awt.event.MouseEvent event)

Specified by:

mousePressed in interface java.awt.event.MouseListener

Overrides:

mousePressed in class Analysis

keyReleased

public void keyReleased(java.awt.event.KeyEvent event)

Specified by:

keyReleased in interface java.awt.event.KeyListener

Overrides:

keyReleased in class Analysis

keyPressed

public void keyPressed(java.awt.event.KeyEvent event)

Specified by:

keyPressed in interface java.awt.event.KeyListener

Overrides:

keyPressed in class Analysis

keyTyped

public void keyTyped(java.awt.event.KeyEvent event)

Specified by:

keyTyped in interface java.awt.event.KeyListener

Overrides:

keyTyped in class Analysis

reset

public void reset()

Description copied from class: Analysis

This method is the default reset method, that resets the analysis process to its initial state. It should be overridden by the specific analysis tools.

Overrides:

reset in class Analysis